I am the main researcher in a start-up company doing ML consulting and dev. We are working on an algo using machine learning tools such as Recurrent Neural Networks and other more recent nets to analyze and distinguish between lncRNA and mRNA.
As a baseline we compare our algo to FEELnc and get good results with an original approach. Other comparable methods are: mRNN RNA and lncRNAnet
We would like to publish a research paper soon about this new method. If you are familiar with those tools and can contribute the biology side of the analysis please get in touch. We take care of the implementation and coding which is ready already.
It is a great opportunity to bring together two communities and leverage tools recently developed in the Machine Learning area.
Kindly contact us with some background about you (past work for example) : ai@rednalabs.com / ai at rednalabs.com
Please write more about who you (or 'they'?) are. We don't want our community making contact with unknown entities when these web forums already provide an open means for communication. Why do you require closed communication?
If I wrote a similar request as above to a University email, it would be filtered as spam and never seen. Please put yourself in the shoes of the other.
Right, for more background, ReDNA Labs develops new technology and algorithms in the machine learning area. One of our recent publications is IGLOO which is an alternative to Recurrent Neural Networks (RNN) and is particularly suitable to be used with long sequences. One example of long sequences is a fasta file.
Our focus is on Machine Learning and that is the reason we hope to find people from the biology side on this forum to bring the Biology expertise, while we bring the ML expertise to solve the problem exposed in the post.
If people interested in taking part in this cross domain effort prefer to leave their contact details right here, I will be glad to contact them myself, the closed communication was just for convenience.
Happy to answer more questions.
Thank you!
Hi Kelvin i do want to know if your research " co-author with Bioinformatics background for paper using Machine Learning in Biology" is still active. Am intrested in working on Neural Network implementation with you.
Fyi, user sieva1 has not logged in for 9 months so you might try the email address in the toplevel question.