Tool: CLIP-seq database contains PAR-CLIP, HITS-CLIP, iCLIP, eCLIP, dCLIP, CLASH, CLEAR-CLIP, irCLIP,sCLIP and uvCLIP
2
gravatar for lsp03yjh
4 weeks ago by
lsp03yjh580
China
lsp03yjh580 wrote:

Recent advances in high-throughput sequencing of immunoprecipitated RNAs after cross-linking (CLIP-Seq) provide powerful ways to identify biologically relevant miRNA-target and RNA-binding protein(RBP)–RNA interactions.

starBase v3.0 CLIP-seq database provides more than 700 CLIP-seq data from 203 RNA-binding proteins(RBPs). The CLIP technologies contains PAR-CLIP, HITS-CLIP, iCLIP, eCLIP, dCLIP, CLASH, CLEAR-CLIP, irCLIP,sCLIP, uvCLIP, etc.

starBase v3.0 is the first platform to visualize the binding motifs of RBPs by de novo analyzing the CLIP-seq data and provides genomic coordinates of identified RBPs binding motifs across different cell types, tissues and conditions.

All CLIP-seq datasets is freely available at http://starbase.sysu.edu.cn/download.php

RBP motifs: enter image description here

ADD COMMENTlink modified 6 days ago • written 4 weeks ago by lsp03yjh580

The second link is not functional.

http://starbase.sysu.edu.cn/rbpDownload.php
ADD REPLYlink written 4 weeks ago by ATpoint8.1k

Thanks for your information. The link is http://starbase.sysu.edu.cn/download.php. We have modified it.

ADD REPLYlink modified 4 weeks ago • written 4 weeks ago by lsp03yjh580

Thanks!

I noticed there are 2 relatively well cited Rfbox papers were not included?

https://www.ncbi.nlm.nih.gov/pubmed/29398366

https://www.ncbi.nlm.nih.gov/pubmed/24613350

ADD REPLYlink modified 26 days ago • written 26 days ago by Eric Lim1.1k
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