Tool:RNA Motifs and CLIP database from PAR-CLIP, iCLIP, eCLIP, dCLIP, CLASH, CLEAR-CLIP, irCLIP,sCLIP, hiCLIP and uvCLIP
0
6
Entering edit mode
3.2 years ago
lsp03yjh ▴ 810

Recent advances in high-throughput sequencing of immunoprecipitated RNAs after cross-linking (CLIP-Seq) provide powerful ways to identify biologically relevant miRNA-target and RNA-binding protein(RBP)–RNA interactions.

starBase v3.0 CLIP-seq database provides more than 700 CLIP-seq data from >200 RNA-binding proteins(RBPs). The CLIP technologies contains PAR-CLIP, HITS-CLIP, iCLIP, eCLIP, dCLIP, CLASH, CLEAR-CLIP, irCLIP,sCLIP, uvCLIP, etc.

starBase v3.0 is the first platform to visualize the binding motifs of RBPs by de novo analyzing the CLIP-seq data and provides genomic coordinates of identified RBPs binding motifs across different cell types, tissues and conditions.

All Datasets are freely available using Web API http://starbase.sysu.edu.cn/tutorialAPI.php

**

m6A-modifying protein YTHDF2 Binding Motifs as follows:

** enter image description here

CLIP PAR-CLIP iCLIP eCLIP HITS-CLIP Tool • 3.4k views
ADD COMMENT
1
Entering edit mode

Thanks!

I noticed there are 2 relatively well cited Rfbox papers were not included?

https://www.ncbi.nlm.nih.gov/pubmed/29398366

https://www.ncbi.nlm.nih.gov/pubmed/24613350

ADD REPLY
0
Entering edit mode

The second link is not functional.

http://starbase.sysu.edu.cn/rbpDownload.php
ADD REPLY
0
Entering edit mode

Thanks for your information. The link is http://starbase.sysu.edu.cn/download.php. We have modified it.

ADD REPLY
0
Entering edit mode

You can download all data using the web API ( http://starbase.sysu.edu.cn/tutorialAPI.php )

ADD REPLY

Login before adding your answer.

Traffic: 1241 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6