Tool: RNA Motifs and CLIP database from PAR-CLIP, iCLIP, eCLIP, dCLIP, CLASH, CLEAR-CLIP, irCLIP,sCLIP, hiCLIP and uvCLIP
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gravatar for lsp03yjh
14 months ago by
lsp03yjh770
China
lsp03yjh770 wrote:

Recent advances in high-throughput sequencing of immunoprecipitated RNAs after cross-linking (CLIP-Seq) provide powerful ways to identify biologically relevant miRNA-target and RNA-binding protein(RBP)–RNA interactions.

starBase v3.0 CLIP-seq database provides more than 700 CLIP-seq data from >200 RNA-binding proteins(RBPs). The CLIP technologies contains PAR-CLIP, HITS-CLIP, iCLIP, eCLIP, dCLIP, CLASH, CLEAR-CLIP, irCLIP,sCLIP, uvCLIP, etc.

starBase v3.0 is the first platform to visualize the binding motifs of RBPs by de novo analyzing the CLIP-seq data and provides genomic coordinates of identified RBPs binding motifs across different cell types, tissues and conditions.

All Datasets are freely available using Web API http://starbase.sysu.edu.cn/tutorialAPI.php

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m6A-modifying protein YTHDF2 Binding Motifs as follows:

** enter image description here

ADD COMMENTlink modified 6 months ago • written 14 months ago by lsp03yjh770
1

Thanks!

I noticed there are 2 relatively well cited Rfbox papers were not included?

https://www.ncbi.nlm.nih.gov/pubmed/29398366

https://www.ncbi.nlm.nih.gov/pubmed/24613350

ADD REPLYlink modified 14 months ago • written 14 months ago by Eric Lim1.6k

The second link is not functional.

http://starbase.sysu.edu.cn/rbpDownload.php
ADD REPLYlink written 14 months ago by ATpoint26k

Thanks for your information. The link is http://starbase.sysu.edu.cn/download.php. We have modified it.

ADD REPLYlink modified 14 months ago • written 14 months ago by lsp03yjh770

You can download all data using the web API ( http://starbase.sysu.edu.cn/tutorialAPI.php )

ADD REPLYlink written 12 months ago by lsp03yjh770
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