NEWICK format representation of the tree ?

Question

[tehreemgull]

ihave to contruct a tree in such a way output will in NEWICK format so plz recommend me which tool should output a NEWICK format representation of the tree ?

[Joe]

I'm going to go out on a limb (tree based pun not intended) and say... literally any.

[natasha.sernova]

Let’s start from WIKI introduction:

http://evolution.genetics.washington.edu/phylip/newicktree.html

http://wiki.christophchamp.com/index.php?title=Newick_phylogenetic_tree_format

ETEtoolkit

http://etetoolkit.org/treeview/

scikit:

http://scikit-bio.org/docs/0.4.1/generated/skbio.io.format.newick.html

Newick Utilities

http://cegg.unige.ch/newick_utils

A very nice post with many different tools.

What Is A Good Phylogenetic Tree Display Program For Large Data Sets?

Answer 1

[Jean-Karim Heriche]

Most tree-building software should be able to export trees in Newick format. For example, the R package ape has a write.tree function that can do this.