Question: How to add short sequences to a database using makeblastdb
1
gravatar for biolearner
6 months ago by
biolearner10
biolearner10 wrote:

How can I get makeblastdb create a database with short sequences from my .fasta file?

sequencing sequence alignment • 259 views
ADD COMMENTlink modified 6 months ago by Pierre Lindenbaum118k • written 6 months ago by biolearner10

Does this work?

makeblastdb -dbtype nucl -title "Short sequences" -in sequences.fasta -input_type fasta -out DBshort
ADD REPLYlink written 6 months ago by h.mon24k

The process shouldn’t differ from a normal blastdb creation. Have you encountered an error or a problem you’ve not shown us?

ADD REPLYlink written 6 months ago by jrj.healey11k
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