Hello, I have performed the mapping of miRNA reads to the mirbase precursor file by SHRiMP. But I'm facing a probem in HTSeq while taking the read counts from the output.sam file.
The error which I'm trying to solve is;
Error occured when processing SAM input (line 2305 of file HBI_10.sam): ("'seq' and 'qualstr' do not have the same length.", 'line 2305 of file HBI_10.sam') [Exception type: ValueError, raised in _HTSeq.pyx:808]
Has anyone of you come across this error? What might be the solution?