Hi All, I need some help interpreting my DEseq2 results. Here is a bit of my DEseq2 code:
dds$cond <- relevel(dds$cond, ref = "C") dds = DESeq(dds, fitType = "parametric") my.names<-resultsNames(dds) my.names  "Intercept" "cond_T_vs_C"
Then I did:
res<- results(dds, contrast=list( "cond_T_vs_C"), test="Wald")
Now looking at the result, for this particular gene I have:
baseMean log2FoldChange lfcSE stat pvalue padj Seq_483975_2034 1995.245 -1.354257 0.4045764 -3.347346 0.000815893 0.005723768
Can someone please explain me whether this gene is down regulated in Control (C) or in Treatment (T)? Thanks