Question: ANNOVAR download and processing frequently Questions
0
gravatar for Shicheng Guo
15 months ago by
Shicheng Guo8.0k
Shicheng Guo8.0k wrote:

How to solve the problem annovar cannot download esp6500siv2?

annotate_variation.pl -downdb -webfrom annovar esp6500siv2 humandb -buildver hg19 &
annotate_variation.pl -downdb esp6500siv2 humandb -buildver hg19 &

Thanks.

download annovar esp6500siv2 • 507 views
ADD COMMENTlink modified 15 months ago • written 15 months ago by Shicheng Guo8.0k

The address used by ANNOVAR seems to be out of date:

Not Found

The requested URL /goldenPath/hg19/database/esp6500siv2.txt.gz was not found on this server.

I could only find evsEsp6500.sql and evsEsp6500.txt.gz at the directory ( http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/ ) from which ANNOVAR tries to download this file.

Maybe you can try contacting ANNOVAR authors.

edit: you can find the data at http://evs.gs.washington.edu/EVS/

ADD REPLYlink modified 15 months ago • written 15 months ago by h.mon29k
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