Question: Software to visualize ChIP-seq peak file
0
gravatar for afli
22 months ago by
afli190
China, Beijing, IGDB
afli190 wrote:

Dear all, I have bam or bigwig files from ChIP-seq data. IGV is a good tool to visualizing them, but there is some error when opening the saved svg file in adobe illustrator, so I cannot do modification and get the expected beautiful figures. Is there any other software that can visualize these files and produce beautiful, if possible, vector pictures? Thank you for your attention.

Aifu.

visualization chip-seq • 664 views
ADD COMMENTlink modified 22 months ago • written 22 months ago by afli190
1

Peak files are generally in bed format and can be visualized in IGV and SVG images you can open in any Web browser.

ADD REPLYlink modified 22 months ago • written 22 months ago by Arup Ghosh2.7k

Thank you for your contribution!

ADD REPLYlink written 22 months ago by afli190
1

I typically open SVG in Inkscape, allowing to save as pdf. I am not well familiar with Illustrator but it should be able to open pdfs, right? Simply take the turn IGV-Inkscape -> pdf - Illustrator

ADD REPLYlink modified 22 months ago • written 22 months ago by ATpoint38k

Yeah, this is a very good idea! I checked this and get the expected pdf file. Thank you!

ADD REPLYlink written 22 months ago by afli190
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