Question: Software to visualize ChIP-seq peak file
0
gravatar for afli
7 months ago by
afli180
China, Beijing, IGDB
afli180 wrote:

Dear all, I have bam or bigwig files from ChIP-seq data. IGV is a good tool to visualizing them, but there is some error when opening the saved svg file in adobe illustrator, so I cannot do modification and get the expected beautiful figures. Is there any other software that can visualize these files and produce beautiful, if possible, vector pictures? Thank you for your attention.

Aifu.

visualization chip-seq • 335 views
ADD COMMENTlink modified 7 months ago • written 7 months ago by afli180
1

Peak files are generally in bed format and can be visualized in IGV and SVG images you can open in any Web browser.

ADD REPLYlink modified 7 months ago • written 7 months ago by arup1.4k

Thank you for your contribution!

ADD REPLYlink written 7 months ago by afli180
1

I typically open SVG in Inkscape, allowing to save as pdf. I am not well familiar with Illustrator but it should be able to open pdfs, right? Simply take the turn IGV-Inkscape -> pdf - Illustrator

ADD REPLYlink modified 7 months ago • written 7 months ago by ATpoint18k

Yeah, this is a very good idea! I checked this and get the expected pdf file. Thank you!

ADD REPLYlink written 7 months ago by afli180
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