Question: Extract specific information from BLASTn output
0
gravatar for shuksi1984
22 months ago by
shuksi198460
shuksi198460 wrote:

How can I extract query sequence, it's corresponding rsid, subject sequence, it's corresponding rsID, score, and blast metadata in excel sheet from BLASTn output?

sequence alignment genome • 1.1k views
ADD COMMENTlink written 22 months ago by shuksi198460
2

You can format the BLAST output using -outfmt. -outfmt 6 will give you tabular format.

ADD REPLYlink written 22 months ago by rice.researcher150
1

All options: https://www.ncbi.nlm.nih.gov/books/NBK279684/

ADD REPLYlink written 22 months ago by gb1.9k
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