Question: Problem in installing mclust package R
0
gravatar for Rahil
2.0 years ago by
Rahil180
Rahil180 wrote:

Hello,

I tried to install mclust package R in RStudio using different ways

install.packages("mclust")
devtools::install_github("cran/mclust")
biocLite('mclust')

but I get this error:

* installing *source* package ‘mclust’ ...
** package ‘mclust’ successfully unpacked and MD5 sums checked
** libs
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-Oe9izK/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c init.c -o init.o
gfortran   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-Oe9izK/r-base-3.4.4=. -fstack-protector-strong  -c mclust.f -o mclust.o
gfortran   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-Oe9izK/r-base-3.4.4=. -fstack-protector-strong  -c mclustaddson.f -o mclustaddson.o
g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o mclust.so init.o mclust.o mclustaddson.o -llapack -lblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR
/usr/bin/ld: cannot find -lgfortran
/usr/bin/ld: cannot find -lgfortran
collect2: error: ld returned 1 exit status
/usr/share/R/share/make/shlib.mk:6: recipe for target 'mclust.so' failed
make: *** [mclust.so] Error 1
ERROR: compilation failed for package ‘mclust’
* removing ‘/home/mohammadi/R/x86_64-pc-linux-gnu-library/3.4/mclust’
Warning in install.packages :
  installation of package ‘mclust’ had non-zero exit status

Can anyone help me out? Many thanks!

mclust lgfortran R • 1.3k views
ADD COMMENTlink modified 2.0 years ago by Jean-Karim Heriche24k • written 2.0 years ago by Rahil180
2
gravatar for Jean-Karim Heriche
2.0 years ago by
EMBL Heidelberg, Germany
Jean-Karim Heriche24k wrote:

This is not a bioinformatics question. Try on StackOverflow.

Anyway, the error message indicates that the compiler can't find the gfortran library. This is part of the gcc compiler suite but may have to be installed separately on some systems, e.g. on Ubuntu, try

sudo apt-get install gfortran
ADD COMMENTlink modified 2.0 years ago by zx87549.9k • written 2.0 years ago by Jean-Karim Heriche24k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1799 users visited in the last hour
_