Actually i am trying to upload cosmic file in oncodriveclust R package but am unable to upload. Anyone suggest me to how to upload the file to get the results.
Please show the commands that you are using, and also any warning or error messages that you have received.
i am using this command
oncodriveclust -o data/output.csv -m 3 --cgc data/Brain_original.csv examples/tcga.BRCA.nonsyn.txt examples/tcga.BRCA.syn.txt data/gene_transcripts.tsv
OncodriveCLUIST has been updated with OncodriveCLUSTL
You can adapt your own input based on input in example data (paad.txt.gz)
...and the warning and / or error message?; and the format of your data? By not providing as much information as possible, you are not helping your situation. Most users ignore questions that have minimal information.