I am want to use ea-utils fastq-join to join multiple amplicon sequencing pair end read.
I am working on HPC server but I have installed myself ea-utils as it is not available on server.
so the path for ea-utils is:
and multiple fast files names are like this:
Soil-7_S32_L001_R1_001.fastq.gz Soil-7_S32_L001_R2_001.fastq.gz Soil-8_S32_L001_R1_001.fastq.gz Soil-8_S32_L001_R2_001.fastq.gz Soil-9_S42_L001_R1_001.fastq.gz Soil-9_S42_L001_R2_001.fastq.gz
Now, How should I run bash scripts loop to join the multiple files in a single command?
Thanks in advance.