Question: How to map SNP rsids to genes and flanks
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robjohn70000 • 130 wrote:
Hi,
I have a long list of human genes like this:
ATR, BAK1, BAX ......
I will like to extract all snps in this region: 1KB of sequence (5') + gene + 1kb of sequence (3'). How can I easily carry out this extraction? Thanks
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modified 2.1 years ago
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Emily_Ensembl ♦ 21k
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2.1 years ago by
robjohn70000 • 130
see How To Map A Snp To A Gene Around +/- 60Kb ? but replace the WHERE clause with the proteinID.
Search for "map SNP to genes", there has been asked many times before, see links at: C: Assigning SNPs to gene names based on genomic coordinates