Question: MAGI, cBioPortal, GATK, Genepattern, MuTect, Oncotater, MutSigCV
0
gravatar for Shicheng Guo
9 months ago by
Shicheng Guo7.8k
Shicheng Guo7.8k wrote:

Trying to make a pipeline to make them together, any existed tools? It will be great if the pipeline can be ran in local server or GenepatternNotebook.

Bioinformatic am is to do the exome-wide sequencing or genome-wide sequencing based cancer mutation identification, annotation and analysis.

Thanks

ADD COMMENTlink modified 9 months ago • written 9 months ago by Shicheng Guo7.8k
1

can be run in local

What does that mean?

ADD REPLYlink written 9 months ago by WouterDeCoster42k
2
gravatar for WouterDeCoster
9 months ago by
Belgium
WouterDeCoster42k wrote:

Many workflow system exist allowing you to chain multiple programs, of which the most popular are (AFAIK) Snakemake and Nextflow.

ADD COMMENTlink written 9 months ago by WouterDeCoster42k
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