Question: MAGI, cBioPortal, GATK, Genepattern, MuTect, Oncotater, MutSigCV
gravatar for Shicheng Guo
13 months ago by
Shicheng Guo8.1k
Shicheng Guo8.1k wrote:

Trying to make a pipeline to make them together, any existed tools? It will be great if the pipeline can be ran in local server or GenepatternNotebook.

Bioinformatic am is to do the exome-wide sequencing or genome-wide sequencing based cancer mutation identification, annotation and analysis.


ADD COMMENTlink modified 13 months ago • written 13 months ago by Shicheng Guo8.1k

can be run in local

What does that mean?

ADD REPLYlink written 13 months ago by WouterDeCoster43k
gravatar for WouterDeCoster
13 months ago by
WouterDeCoster43k wrote:

Many workflow system exist allowing you to chain multiple programs, of which the most popular are (AFAIK) Snakemake and Nextflow.

ADD COMMENTlink written 13 months ago by WouterDeCoster43k
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