MAGI, cBioPortal, GATK, Genepattern, MuTect, Oncotater, MutSigCV
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2.6 years ago
Shicheng Guo ★ 8.8k

Trying to make a pipeline to make them together, any existed tools? It will be great if the pipeline can be ran in local server or GenepatternNotebook.

Bioinformatic am is to do the exome-wide sequencing or genome-wide sequencing based cancer mutation identification, annotation and analysis.

Thanks

Tutorial MAGI cBioPortal MuTect MutSigCV • 646 views
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can be run in local

What does that mean?

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2.6 years ago

Many workflow system exist allowing you to chain multiple programs, of which the most popular are (AFAIK) Snakemake and Nextflow.

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