Question: How to match proteins to a genome
gravatar for l.souza
7 months ago by
Brasilia, Brazil
l.souza70 wrote:

I would like to map the identified proteins obtained by a LC-MS/MS experiment to an existing genome sequence deposited at PATRIC database. I have a list with the proteins accession (Uniprot).

Does anyone have a suggestion on how to do it?

Best regards,


genomics patric proteomics • 204 views
ADD COMMENTlink written 7 months ago by l.souza70
  1. create a database of proteins (using blast, diamond, rapsearch2 etc)
  2. Search contigs/nucleotide sequences against database of proteins.
ADD REPLYlink written 7 months ago by cpad011212k
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