I am running spades for denovo assembly for several strains. I want to run quast for quality check on denovo assembly using the following command
I want to write a script like looping (while) so I do not need to manually enter the command each time.
contigs.fasta is found in the output directory of spades denovo assembly. I want quast to:
1- Read contigs.fasta in each assembly directory separately.
2- To create a table that contain a list of all assembly information for each strain in one table only.