Question: GSEA with mouse RNAseq data
gravatar for aw_gibbs
9 days ago by
aw_gibbs0 wrote:

Hi everyone,

I have had RNAseq performed on mouse samples (12 samples, 4 groups) and have the results ready to plug into Gene Set Enrichment Analysis (GSEA) software.

I notice that there are plenty of human gene sets available on MSigDB, but not many for mouse. I would like to run GSEA with 6 signalling pathway gene sets, but the only ones I can find are for human. Does anyone know if the human signalling pathways are exactly the same as mouse signalling pathways? Or is there a mouse database that I can go onto to download mouse specific signalling pathway gene sets?

Thank you in advance!


rna-seq • 78 views
ADD COMMENTlink modified 9 days ago by Buffo1.4k • written 9 days ago by aw_gibbs0
gravatar for Buffo
9 days ago by
Buffo1.4k wrote:

You can use webgestalt, it has a list of organisms (including mouse)

ADD COMMENTlink written 9 days ago by Buffo1.4k
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