Question: GSEA with mouse RNAseq data
0
gravatar for Alex Gibbs
8 months ago by
Alex Gibbs40
Cardiff University
Alex Gibbs40 wrote:

Hi everyone,

I have had RNAseq performed on mouse samples (12 samples, 4 groups) and have the results ready to plug into Gene Set Enrichment Analysis (GSEA) software.

I notice that there are plenty of human gene sets available on MSigDB, but not many for mouse. I would like to run GSEA with 6 signalling pathway gene sets, but the only ones I can find are for human. Does anyone know if the human signalling pathways are exactly the same as mouse signalling pathways? Or is there a mouse database that I can go onto to download mouse specific signalling pathway gene sets?

Thank you in advance!

Alex

rna-seq • 681 views
ADD COMMENTlink modified 8 months ago by Buffo1.7k • written 8 months ago by Alex Gibbs40
2
gravatar for Buffo
8 months ago by
Buffo1.7k
Buffo1.7k wrote:

You can use webgestalt, it has a list of organisms (including mouse)

ADD COMMENTlink written 8 months ago by Buffo1.7k
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