Question: Control Samples for Excavator
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gravatar for BAGeno
14 months ago by
BAGeno170
BAGeno170 wrote:

Hi,

I want to find copy number variation in my samples. Samples are of psychiatry patients and I have done exome sequencing on NextSeq. For this purpose I want analyse samples with excavator. The problem is choosing control sample for this analysis. Can I choose ExAC samples? Will it be right to choose samples that are run on HiSeq? Also can you suggest some other tools for this purpose. As most tools available for CNV analysis are for tumor analysis and based on R.

cnv excavator • 273 views
ADD COMMENTlink written 14 months ago by BAGeno170

You can try XHMM http://atgu.mgh.harvard.edu/xhmm/tutorial.shtml, but you will need several samples to got strong statistical results.

Best

ADD REPLYlink written 14 months ago by Titus910
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