Question: genotype field in vcf file
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gravatar for manjumoorthy95
14 months ago by
manjumoorthy9520 wrote:

In SNP analysis, the result file in vcf file format, would have a field of genotype of the strains analysed. The genotype 0/0 means both the alleles are that of the reference genome. But then how is it an SNP if both alleles match the reference genome? Can anybody explain it to me, please?

snp genotype ngs vcf • 397 views
ADD COMMENTlink modified 13 months ago by Biostar ♦♦ 20 • written 14 months ago by manjumoorthy9520

show us a line of your vcf and explain us how it was generated.

ADD REPLYlink modified 14 months ago by WouterDeCoster44k • written 14 months ago by Pierre Lindenbaum129k
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