I noticed there is a conda version of bedops bedmap function available. I've been struggling to use it though. Could someone refer me to any documentation of it's usage in a python script please. Have a great day. Thanks in advance.
Hi- I'm not sure if there is a python API for bedops (similar to pybedtools, if this is what you mean). However, in a python script you can use the subprocess library to execute external commands. E.g. something like (see also check_call):