Question: Bowtie2: Error: No input read files were valid
18 months ago by
200dumplings • 10
200dumplings • 10 wrote:
bowtie2 -x mm10 -q -1 /PX0315/C89CJANXX_2/PX0315_AACCCC/C89CJANXX_2_AACCCC_1.fastq -2 /PX0315/C89CJANXX_2/PX0315_AACCCC/C89CJANXX_2_AACCCC_2.fastq -S H3K4ME1_NATIVE_A03.sam
ERROR: stat: Bad file descriptor Warning: Could not open read file "/PX0315/C89CJANXX_2/PX0315_AACCCC/C89CJANXX_2_AACCCC_1.fastq" for reading; skipping... Error: No input read files were valid (ERR): bowtie2-align exited with value 1
Question: The fastq samples files seem to be fine, as they could be read by fastqc. I was wondering what went wrong here?
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