Question: vcftools merge: Incorrect number of F1R2 fields (2) at chr12:29486505, cannot merge.
17 months ago by
Shicheng Guo • 8.5k
Shicheng Guo • 8.5k wrote:
I want to merge 38 vcf files with bcftools merge:
bcftools merge --force-samples -l input.txt -Oz -o LungBrain.vcf.gz
However, bcftools report error:
Incorrect number of F1R2 fields (2) at chr12:29486505, cannot merge.
I checked this variant and found:
chr12 29486505 . CAG C,CTAG 16.87 . GT 0/0 0/0 ./. 0/2
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