I've constructed the tree with bootstrap supports in Ape package. But i'd prefer to get bootstrap values in percentage not in absolute number of replications. How can i do that in Ape?
Access the values in the returned object and divide by the number of bootstrap samples.
There is no slot named node.label in my object of class 'phylo' (i use ape 5.3). So i can not execute something like:
tree$node.label <- as.numeric(tree$node.label)/1000
Maybe show then what you do have. Some code might also be useful.
I solved the issue by the R code:
nodelabels(round(myBoots/1000*100),adj = 0.7)
where myBoots is numeric vector containing my bootstrap values