Missing mappability file for mm10

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4.8 years ago

fabbri.marco ▴ 10

I would like to use HMMcopy and ichorCNA for mm10. It looks there are no Mappability or Uniqueness of Reference Genome from ENCODE for mm10, so I can not generate the segmentation file. Anyone has already produced Mappability files for mm10 and wants to share? Any other suggestions?

Thanks

Marco

mm10 mappability • 1.3k views

ADD COMMENT • link updated 2.7 years ago by Ram 43k • written 4.8 years ago by fabbri.marco ▴ 10

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There is a DNase mappability file available from ENCODE here.

ADD REPLY • link 4.8 years ago by GenoMax 141k

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Thank you but I do not think I can use it for HMMcopy

Marco

ADD REPLY • link updated 2.7 years ago by Ram 43k • written 4.8 years ago by fabbri.marco ▴ 10

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hi there. did you ever figure this out? i have the same problem

ADD REPLY • link 2.7 years ago by heskett ▴ 110

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