Where to find files known sites in vcf format for recalibration of exome bases?

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4.8 years ago

manubiomed20 ▴ 10

when I recalibrated the complete human genome I used the file

Homo_sapiens_assembly38.known_indels.vcf.gz,

I believe I can't do this file º to generate the bam racalibration table of an exome, so where do I find the exoma?

Assembly • 1.5k views

ADD COMMENT • link updated 4.8 years ago by Pierre Lindenbaum 161k • written 4.8 years ago by manubiomed20 ▴ 10

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why do you think there is a specific file for the exome indels ? what would be the problem in using Homo_sapiens_assembly38.known_indels.vcf.gz ?

ADD REPLY • link 4.8 years ago by Pierre Lindenbaum 161k

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I have this question. so can i use it?

ADD REPLY • link 4.8 years ago by manubiomed20 ▴ 10

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Your question makes no sense.

ADD REPLY • link 4.8 years ago by Kevin Blighe 87k

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