Question: Where to find files known sites in vcf format for recalibration of exome bases?
0
gravatar for manubiomed20
11 months ago by
manubiomed2010
manubiomed2010 wrote:

when I recalibrated the complete human genome I used the file

Homo_sapiens_assembly38.known_indels.vcf.gz,

located at this address: ftp://ftp.broadinstitute.org/bundle/hg38/.

I believe I can't do this file ┬║ to generate the bam racalibration table of an exome, so where do I find the exoma?

assembly • 370 views
ADD COMMENTlink modified 11 months ago by Pierre Lindenbaum129k • written 11 months ago by manubiomed2010
1

why do you think there is a specific file for the exome indels ? what would be the problem in using Homo_sapiens_assembly38.known_indels.vcf.gz ?

ADD REPLYlink written 11 months ago by Pierre Lindenbaum129k
I have this question. so can i use it?
ADD REPLYlink written 11 months ago by manubiomed2010

Your question makes no sense.

ADD REPLYlink written 11 months ago by Kevin Blighe61k
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