Hi I am new to using both rmats as well as the bioconda system. I am curious as to if I put the same input into the line in conda as I would on rmats, i.e.;
"python RNASeq-MATS.py -b1 testData/231ESRP.25K.rep-1.bam,testData/231ESRP.25K.rep-2.bam -b2 testData/231EV.25K.rep-1.bam,testData/231EV.25K.rep-2.bam -gtf gtf/Homo_sapiens.Ensembl.GRCh37.72.gtf -o bam_test -t paired -len 50 -c 0.0001 -analysis U -libType fr-firststrand"
What should I change to start getting output?
thanks
I think your question is not directly related to bioinformatics. However, I would try
which python
. If python is available from your bioconda -->~/anaconda3/bin/python
, then command will run otherwise no. Then you may need to doconda activate
Ok, I am just curious if you have any recommendations to other forums that may be able to help more? Since this isn't directly related to bioinformatics