Question: hisat2 installation error
0
gravatar for nori
18 days ago by
nori10
nori10 wrote:

I installed hisat2 on mac. The command is as follows: brew install hisat2. However, when I execute hisat2-build ..., the following message appears.

dyld: Symbol not found: __ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEED1Ev
   Referenced from: /usr/local/bin/../Cellar/hisat2/2.1.0/bin/hisat2-align-s
   Expected in: /usr/lib/libstdc++.6.0.9.dylib
  in /usr/local/bin/../Cellar/hisat2/2.1.0/bin/hisat2-align-s
(ERR): Description of arguments failed!
Exiting now ...

I do not understand the meaning. I know that the installation was not successful, but please let me know how to handle it.

software error • 118 views
ADD COMMENTlink modified 14 days ago by finswimmer12k • written 18 days ago by nori10

you can try the precompiled one or this link?

ADD REPLYlink written 18 days ago by Sishuo Wang170

Agreed. Alternatively use anaconda package manager. No need to compile standard software yourself.

ADD REPLYlink written 18 days ago by ATpoint21k
1
gravatar for nori
14 days ago by
nori10
nori10 wrote:

Thank you for your comments. I was able to run the hisat2 with ./hisat2.

ADD COMMENTlink written 14 days ago by nori10
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