Question: How to convert multiple bam format files into fastas?
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gravatar for manubiomed20
11 weeks ago by
manubiomed200 wrote:

I have several bam format files that I need to convert each one to fasta files. I haven't found any commands I can use to convert multiple bam to fasta at one time. It is possible?

assembly • 192 views
ADD COMMENTlink written 11 weeks ago by manubiomed200

BAM/SAM to FASTA conversion Use a for loop or (more elaborate) GNU parallel for multiple files.

ADD REPLYlink modified 11 weeks ago • written 11 weeks ago by ATpoint25k

You really want to 'convert'? Or do you want to make a consensus sequence?

ADD REPLYlink written 11 weeks ago by swbarnes27.0k

I believe that reaching consensus would be very useful. how can I do this ? I am really starting with bioinformatics and still have difficulty.

ADD REPLYlink written 11 weeks ago by manubiomed200

I didn't understand what you meant by " Use um for loop ou (mais elaborado) GNU parallel para vĂ¡rios arquivos'. I am really starting with bioinformatics and still have difficulty.

ADD REPLYlink written 11 weeks ago by manubiomed200
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