I have several bam format files that I need to convert each one to fasta files. I haven't found any commands I can use to convert multiple bam to fasta at one time.
It is possible?
BAM/SAM to FASTA conversion
Use a for loop or (more elaborate) GNU parallel for multiple files.
You really want to 'convert'? Or do you want to make a consensus sequence?
I believe that reaching consensus would be very useful. how can I do this ?
I am really starting with bioinformatics and still have difficulty.
I didn't understand what you meant by " Use um for loop ou (mais elaborado) GNU parallel para vários arquivos'. I am really starting with bioinformatics and still have difficulty.