Question: How to convert multiple bam format files into fastas?
1
gravatar for manubiomed20
14 months ago by
manubiomed2010
manubiomed2010 wrote:

I have several bam format files that I need to convert each one to fasta files. I haven't found any commands I can use to convert multiple bam to fasta at one time. It is possible?

assembly • 391 views
ADD COMMENTlink written 14 months ago by manubiomed2010
1

BAM/SAM to FASTA conversion Use a for loop or (more elaborate) GNU parallel for multiple files.

ADD REPLYlink modified 14 months ago • written 14 months ago by ATpoint40k

You really want to 'convert'? Or do you want to make a consensus sequence?

ADD REPLYlink written 14 months ago by swbarnes28.9k

I believe that reaching consensus would be very useful. how can I do this ? I am really starting with bioinformatics and still have difficulty.

ADD REPLYlink written 14 months ago by manubiomed2010

I didn't understand what you meant by " Use um for loop ou (mais elaborado) GNU parallel para vĂ¡rios arquivos'. I am really starting with bioinformatics and still have difficulty.

ADD REPLYlink written 14 months ago by manubiomed2010
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