How to convert multiple bam format files into fastas?

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4.7 years ago

manubiomed20 ▴ 10

I have several bam format files that I need to convert each one to fasta files. I haven't found any commands I can use to convert multiple bam to fasta at one time. It is possible?

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ADD COMMENT • link 4.7 years ago by manubiomed20 ▴ 10

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BAM/SAM to FASTA conversion Use a for loop or (more elaborate) GNU parallel for multiple files.

ADD REPLY • link 4.7 years ago by ATpoint 81k

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You really want to 'convert'? Or do you want to make a consensus sequence?

ADD REPLY • link 4.7 years ago by swbarnes2 14k

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I believe that reaching consensus would be very useful. how can I do this ? I am really starting with bioinformatics and still have difficulty.

ADD REPLY • link 4.7 years ago by manubiomed20 ▴ 10

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I didn't understand what you meant by " Use um for loop ou (mais elaborado) GNU parallel para vários arquivos'. I am really starting with bioinformatics and still have difficulty.

ADD REPLY • link 4.7 years ago by manubiomed20 ▴ 10

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