Extract genes sequence from .gb file
1
0
Entering edit mode
4.7 years ago

Hi I am looking for simple way to extract gene sequence from genbank file. I have read a post here to do so, but it was a bit difficult for me. is there any other way to do it? I have around 1000 gene need to be extracted Thanks in advance.

gene sequence genome next-gen • 2.1k views
ADD COMMENT
0
Entering edit mode

Can you point us to the post you (try to) follow? which organism are we talking about here? Any programming language preference?

ADD REPLY
0
Entering edit mode

Hi this post How to extract certain gene of interest from Genbank file I am working on plants (chloroplast) I have very basic experience with command lines. I am looking for tool or simple program to do it. please keep in mind I have more than 1000 sample. Thanks.

ADD REPLY
0
Entering edit mode
ADD REPLY
2
Entering edit mode
4.5 years ago
Juke34 8.6k

gbSmallDNA2gff.pl from Augustus tool.

ADD COMMENT

Login before adding your answer.

Traffic: 2578 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6