Question: Extract genes sequence from .gb file
0
gravatar for masterbiotechnology2
11 months ago by
masterbiotechnology20 wrote:

Hi I am looking for simple way to extract gene sequence from genbank file. I have read a post here to do so, but it was a bit difficult for me. is there any other way to do it? I have around 1000 gene need to be extracted Thanks in advance.

sequence next-gen genome gene • 472 views
ADD COMMENTlink modified 9 months ago by Juke344.5k • written 11 months ago by masterbiotechnology20

Can you point us to the post you (try to) follow? which organism are we talking about here? Any programming language preference?

ADD REPLYlink written 11 months ago by lieven.sterck8.2k

Hi this post How to extract certain gene of interest from Genbank file I am working on plants (chloroplast) I have very basic experience with command lines. I am looking for tool or simple program to do it. please keep in mind I have more than 1000 sample. Thanks.

ADD REPLYlink written 11 months ago by masterbiotechnology20

Check this thread Extracting Gene nucleotide sequences from a Genbank files using Biopython .

ADD REPLYlink written 9 months ago by Arup Ghosh2.6k
2
gravatar for Juke34
9 months ago by
Juke344.5k
Sweden
Juke344.5k wrote:

gbSmallDNA2gff.pl from Augustus tool.

ADD COMMENTlink written 9 months ago by Juke344.5k
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