I am working on WGS data, and I am interested to do some copy number analysis. Particularly, I am looking to see what regions of genome has been applified (or deleted) recurrently in a specific cancer cohort. I know there is a tool for this called GISTIC 2.0, but it has been developed sometime around 2011.
I was wondering, has there been any new tools after GISTIC 2.0 that would do the same? Do they have better Sensitivity/Specificity?