Question: PCA for multiple transcriptome-assemblies
gravatar for Shahzad
4 weeks ago by
Shahzad10 wrote:

Hi Can we perform Principal component analysis PCA for multiple transcriptome-assemblies to show the shared similarity between them?

R rna-seq next-gen assembly • 175 views
ADD COMMENTlink written 4 weeks ago by Shahzad10

Yes, you can plot a PCA on the normalized read-count or expression data of the transcriptome-assemblies.

ADD REPLYlink written 4 weeks ago by sangram_keshari220

What exact input data do you have? - just the assembled transcript sequences in FASTA format?

ADD REPLYlink written 4 weeks ago by Kevin Blighe50k
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