Question: How to multiple apply continuous mapping and Discrete mapping each column in Cytoscape
0
gravatar for mmh7272
5 weeks ago by
mmh727250
mmh727250 wrote:

Hello

I am a beginner BI

I try to draw network using cytoscape

my step : style -> Fill color -> column -> continuous mapping

But this process only apply source column changed.

I wanna both apply Fill color (Source_column1 is continuous, Soure_column2 is binomial)

could you please help me with this ?

#--gene network format--</p>
#Source  Target      Source_column1 Source_column2 </p>
#Gene1   Gene2      1   1</p>
#Gene1   Gene3      2   1</p>
#Gene2   Gene3      3   0</p>
#Gene2   Gene4      4   1</p>
#Gene3   Gene4      5   0</p>
#Gene3   Gene4      6   1</p>
#Gene4   Gene5      7   0</p>
cytoscape genome gene • 143 views
ADD COMMENTlink modified 5 weeks ago by genomax75k • written 5 weeks ago by mmh727250
1

Dear @mmh7272

First what do you want to color? The edge or the node ???

As I see it, in this example you are assigning value to the binding and not to node.

It seems to me that you want to paint the node, is this?

if so, you should add value to your node and not the bindings.

If so I can generate a quick tutorial to help you.

ADD REPLYlink modified 5 weeks ago • written 5 weeks ago by Leite930

Thank you for your kindness response yes, i wanna add node two value, one value is continuos, other is binomial. So, i want to apply two color style Can you help me?

ADD REPLYlink written 5 weeks ago by mmh727250
3
gravatar for Leite
5 weeks ago by
Leite930
São Paulo - Brazil - Unifesp
Leite930 wrote:

@mmh7272

As far as I know just using the ClueGO to do it , meantime, from my experience it will be laborious.

What I advise you to do is use different strategies to show what you want:

1.Put the color in the continuous variable and for the binomial put border color.

Import your data only from interactions, with no interaction value. Add new columns in cytoscape and impute value to each node.

1456d7fffb9f10a27.png

Select the continuous variable you want to add a color scale

286d23fb482c3937d.png

For the second (binomial) variable, you can add a border color of the nodes.

3669613cca0dadedf.png

Or you can add different shapes for your second variable (binomial).

4bf080a0d4944730a.png

HERE you can get more ideas and here too (Cytoscape 3.7.2 User Manual)

ADD COMMENTlink written 5 weeks ago by Leite930

thank you for ur kindness Have a nice day!

ADD REPLYlink written 5 weeks ago by mmh727250
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