Hi all, I'm building a phylogenetic tree, based on protein sequences. I've selected sequences using PSI blast and I 've built an ML tree. Then I visited ensembl site, from entrez gene and I found orthologous an paralogous sequences that weren't listed in PSI blast result. Could you kindly suggest me the different results in ensembl? Do you suggest me to build a phylogenetic protein sequences tree based on ensembl orthologs and paralogs?