Gene Coexpression Network Construction
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2.9 years ago

Hi! I would like to construct a gene coexpression network that I could use for further analysis, like community detection/detecion of functional gene modules in that network. Could anyone please share materials how to construct a gene coexpression network, some code examples maybe ? Thanks very much in advance.

gene coexpression network gene network • 1.3k views
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As ATPoint mentioned you should first look into established packages. They usually have a well explained tutorial. Apart from that a simple Google search can bring out several other tutorials. One such is Step-by-Step Construction of Gene Co-expression Networks from High-Throughput Arabidopsis RNA Sequencing Data.

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2.9 years ago
ATpoint 65k

Hi K. Bedejova, you should check the established packages for this such as WGCNA and then ask specifically for help once you get stuck. People are typically reluctant to provide step-by-setp help if you have not invested any effort yourself.

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2.9 years ago

Another one (not published): Network plot from expression data in R using igraph

Kevin

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