Question: Error in pypeliner
0
gravatar for nilesh.gardi2688
12 months ago by
nilesh.gardi26880 wrote:

I unable to proceed

library(survival)
data<-read.table("KM_plot_input.txt",header=T,row.names=1)
x<-survfit(Surv(data[,2],data[,3])~data[,1])
survdiff(Surv(data[,2],data[,3])~data[,1])

This returns: raise PipelineException('pipeline failed') pypeliner.scheduler.PipelineException: pipeline failed

sequencing • 252 views
ADD COMMENTlink modified 12 months ago by Devon Ryan97k • written 12 months ago by nilesh.gardi26880

I think you need to ask on stackoverflow (today I've learnt)

ADD REPLYlink written 12 months ago by German.M.Demidov1.9k

What does your R code have to do with a python program?

ADD REPLYlink written 12 months ago by Devon Ryan97k

Do you run that R codes via command line (or RStudio) or is this wrapped into some kind of pipeline / workflow manager?

ADD REPLYlink modified 12 months ago • written 12 months ago by ATpoint42k
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