I have problem to run MEGAHIT in .sh script to assembly my sequence. I put command like this
chmod +x assembly.sh (base) [husna@hn001 lulu]$ cd assembly.sh (base) [husna@hn001 assembly.sh]$ megahit -1 HA_1.fq.gz -2 HA_2.fq.gz -o asm
and the answer for my command is like this:
2020-01-15 13:03:03 - MEGAHIT v1.2.9 2020-01-15 13:03:03 - Using megahit_core with POPCNT and BMI2 support 2020-01-15 13:03:03 - Convert reads to binary library
What does it means? and how to solved that problem?