Visualising Peaks Of Chip Seq Experiments On Different Chromosomes

Question

[Dataminer]

Hi!

I need some help to visualise my peaks of three ChIP seq experiments on different chromosoms, something like this http://www.nature.com/nrendo/journal/vaop/ncurrent/fig_tab/nrendo.2011.245_F3.html (but instead of protein names the colour indiaction can be used as the presence of peak).

I have peaks for three factors which needs to be visualised in this manner.

Thank you.

Answer 1

[Sukhi Singh]

Take a look at this and this, they talk about ideograms to plot the data in the form of chromosomes, this may help you.

Cheers

[Dataminer]

Thanks Sukhdeep, I had to edit a bit and transform the python script in second link. It worked in the end. Great help. Thanks a lot mate. Tussi cha gaye

[Sukhi Singh]

I'm glad it worked, Dhanvaad :)

[Dataminer]

Shukriya aapka sirji, Germany mein kaha hai? I am in Netherlands.

[Sukhi Singh]

Please drop me an email and we can talk there!!!!

[Dataminer]

mine is [e-mail], I can't see your id on your profile.