Job: Graph Genome R&D Engineer at Seven Bridges, US or UK
gravatar for amit.jain
7 months ago by
amit.jain10 wrote:

Seven Bridges aims to transform healthcare by developing innovative technologies to address the challenges in representing and understanding the diversity of the human genome and the changes that lead to disease. We have described and implemented the Genome Graph paradigm to robustly, accurately and quickly recover the human genome from sequencing data, and to highlight significant mutations.

Our team is looking for bioinformatics programmers to further develop this software implementation, comprised of novel data structures and advanced computational procedures. Expert knowledge of C++ and numerical algorithms is essential, and a working knowledge of Python would be beneficial.

We have offices in London (UK), and Boston (USA). Remote working would be acceptable.

See the complete role specification on our website.

ADD COMMENTlink modified 6 months ago by tongshiyuan0 • written 7 months ago by amit.jain10

Hello, I use graph genome after fastq quality control, but something wrong with it: ~~~ 2020-03-14 13:49:03.052 ( 276.555s) [main thread ] global_search.hpp:145 0| } 0.000 s: Initialising execution context 0 for ggeco paired-end search terminate called after throwing an instance of 'asd::CError'

Loguru caught a signal: SIGABRT Stack trace: 12 0x40db77 /usr/local/bin/aligner() [0x40db77] 11 0x7fdaa69a9f45 __libc_start_main + 245 10 0x40c023 /usr/local/bin/aligner() [0x40c023] 9 0x48a89d /usr/local/bin/aligner() [0x48a89d] 8 0x47d622 /usr/local/bin/aligner() [0x47d622] 7 0x43ec89 /usr/local/bin/aligner() [0x43ec89] 6 0x7fdaa72d4463 /usr/lib/x86_64-linux-gnu/ [0x7fdaa72d4463] 5 0x7fdaa72d4221 /usr/lib/x86_64-linux-gnu/ [0x7fdaa72d4221] 4 0x7fdaa72d41d6 /usr/lib/x86_64-linux-gnu/ [0x7fdaa72d41d6] 3 0x7fdaa72d63e5 __gnu_cxx::__verbose_terminate_handler() + 293 2 0x7fdaa69c2028 abort + 328 1 0x7fdaa69bec37 gsignal + 55 0 0x7fdaa7ddc330 /lib/x86_64-linux-gnu/ [0x7fdaa7ddc330] 2020-03-14 13:49:07.899 ( 281.401s) [main thread ] :0 FATL| Signal: SIGABRT

Loguru caught a signal: SIGSEGV Stack trace: 11 0x40db77 /usr/local/bin/aligner() [0x40db77] 10 0x7fdaa69a9f45 __libc_start_main + 245 9 0x40c023 /usr/local/bin/aligner() [0x40c023] 8 0x48a89d /usr/local/bin/aligner() [0x48a89d] 7 0x47d622 /usr/local/bin/aligner() [0x47d622] 6 0x43ec89 /usr/local/bin/aligner() [0x43ec89] 5 0x7fdaa72d4463 /usr/lib/x86_64-linux-gnu/ [0x7fdaa72d4463] 4 0x7fdaa72d4221 /usr/lib/x86_64-linux-gnu/ [0x7fdaa72d4221] 3 0x7fdaa72d41d6 /usr/lib/x86_64-linux-gnu/ [0x7fdaa72d41d6] 2 0x7fdaa72d63e5 __gnu_cxx::__verbose_terminate_handler() + 293 1 0x7fdaa69c2177 abort + 663 0 0x7fdaa7ddc330 /lib/x86_64-linux-gnu/ [0x7fdaa7ddc330] 2020-03-14 13:49:07.900 ( 281.402s) [main thread ] :0 FATL| Signal: SIGSEGV ~~~ Can you tell me how to solve it ?

ADD REPLYlink written 6 months ago by tongshiyuan0

Please 1) do not use the answer field to ask questions and 2) please do not ask questions that are unrelated to the toplevel question. This is a job advertisement thread. Please open a new question, add code and background information and then use the format bar (the 10101 button) to highlight code / data examples. Thank you.

ADD REPLYlink written 6 months ago by ATpoint38k
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