Question: lineage analysis on microbial samples (tuberculosis)
0
gravatar for hafiz.talhamalik
4 months ago by
Pakistan
hafiz.talhamalik230 wrote:

I want to perform lineage analysis on my microbial samples. I came across one platform TGS-TB which do this for tuberculosis, but it has the limitation of data uploading. I want to know is there any tool, package which help me perform this type of analysis for my samples ??

genomics genome • 125 views
ADD COMMENTlink modified 4 months ago • written 4 months ago by hafiz.talhamalik230
1

Try QuantTB – a method to classify mixed Mycobacterium tuberculosis infections within whole genome sequencing data , https://doi.org/10.1186/s12864-020-6486-3 , https://github.com/AbeelLab/quanttb/

ADD REPLYlink modified 4 months ago • written 4 months ago by shenwei3565.2k
1

TBProfiler can predict lineage information from WGS data.

ADD REPLYlink written 4 months ago by Arup Ghosh2.5k
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