Question: Download all isoforms
0
gravatar for sbdk
8 months ago by
sbdk60
United States
sbdk60 wrote:

I want to collect all isoforms of all genes (Fasta/Fastq file of nucleotide and protein sequences) of Arabidopsis. I am wondering if there is a straightforward way to download the file from any database.

isoform sequence • 206 views
ADD COMMENTlink modified 8 months ago • written 8 months ago by sbdk60

What have you tried?

ADD REPLYlink written 8 months ago by _r_am31k

I downloaded the pep.fasta and cdna.fasta from here. For some other organisms, I am getting sequences from Uniport->Components->Downloads->FASTA format(canonical and isoform). Am I doing it right?

ADD REPLYlink written 8 months ago by sbdk60

How about getting them from NCBI?

Transcripts
Proteins

ADD REPLYlink written 8 months ago by genomax92k

Thanks !! I tried to download from TAIR and Uniport database (as replied to an earlier comment). I hope I am on right track.

ADD REPLYlink written 8 months ago by sbdk60
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