Plot loci on scaffold (graphic visualization in command line)
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4.1 years ago
Chvatil ▴ 130

Hello, I'm looking for a software to show along scaffols, genes (which all have their own coordinates).

The input file would be :

Scaff_name start end strand
Scaffold1 2 20 +
Scaffold1 30 40 +
Scaffold1 5 25 -
Scaffold2 10 30 +
Scaffold2 35 70 +

and the expected result :

Capture-d-e-cran-2020-04-08-a-14-51-01

Does someone know a software to do that in command line for instance ? Thank you and take care.

sequence genome scaffold • 760 views
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