bulkdownload fastq files from ENA
1
0
Entering edit mode
15 months ago
amitpande74 ▴ 20

Hi, I want to download fastq files from this study. Tried pysradb, pysradb download -p SRP165962 --out-dirbut it downloads all empty foldersanonftp@ftp-trace.ncbi.nlm.nih.gov:/sra/sra-instant/reads/ByRun/sra/SRR/SRR806/SRR8068516/SRR8068516.sra Any better way to download the data. Kindly suggest.

fastq ENA bulk Download • 525 views
ADD COMMENT
1
Entering edit mode
15 months ago
GenoMax 104k

Use sra-explorer: sra-explorer : find SRA and FastQ download URLs in a couple of clicks You can get bulk download command lines.

ADD COMMENT
0
Entering edit mode

If I want to directly download this in an external hard drive ?

ADD REPLY
1
Entering edit mode

Set the destination to the desired location.

ADD REPLY

Login before adding your answer.

Traffic: 2590 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6