Hello I need to map reads on a genome in fasta file format.
For that I installed
Bowtie2 v2.4.1(last version) with biodonda by doing :
conda install bowtie2
Everything went right and I can run bowtie2 properly.
But I need to use the
--sra-acc option and in the documentation they say :
As of version 2.3.5 bowtie2 now supports aligning SRA reads. Prepackaged builds will include a package that supports SRA
and unfortunatly when I use this option I get :
/beegfs/data/my_conda/bin/bowtie2-align-s: unrecognized option '--sra-acc'
So I wondered if you got the same issue when installing bowtie2 with bioconda and if you have a solution in order to add this particular option ?
Thank you for your help.