Tutorial:FASTA file split
0
11
Entering edit mode
3.7 years ago
Juke34 8.4k

how to split a fasta file?

This is a recurring question and many answers can be found among many threads in biostars.

I made a mini-review and listed tools best suited for that purpose here: https://github.com/NBISweden/GAAS/blob/master/annotation/knowledge/split_fasta.md

Hoping it can help to choose the appropriate tool depending the task or the coding language wished.

fasta • 2.3k views
ADD COMMENT
1
Entering edit mode

Thanks for doing the review!! I needed to switch from Pyfasta, and the table with links to examples made it really easy to pick an alternative :-)

ADD REPLY
0
Entering edit mode

Have you tried SEDA? We are very interested in obtaining user's feedback as we are about to release a new CLI.

ADD REPLY
0
Entering edit mode

Nice tutorial. We have developed SEDA, a tool for processing FASTA files, and it has two functions for file splitting: Split (https://www.sing-group.org/seda/manual/operations.html#split), and Regular expression split (https://www.sing-group.org/seda/manual/operations.html#regular-expression-split). Would you consider adding it to the repository?

ADD REPLY
0
Entering edit mode

Yes sounds good . Is it GUI only?

ADD REPLY
0
Entering edit mode

Yes, it is GUI only.

ADD REPLY

Login before adding your answer.

Traffic: 1948 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6