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3.9 years ago
lookamrita
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0
Hi, I have a file with this format (hg19 human genome)
#Chr Start End Ref Alt
1 12673 12673 G A
1 12719 12719 G C
1 12783 12783 G A
1 12807 12807 C T
1 12839 12839 G C
1 12882 12882 C G
1 13012 13012 G A
1 13079 13079 C G
1 13110 13110 G A
I don't have the gene names in the file, I want to use the 1st 3 columns of the files (col1 #chr, col2 #Start, col3#End)and want to add gene names. Any tools or programs to do that from GTF, bed or ref fasta of hg19. Need help
Thanks for the help.
See answers here:
Find Out The Genes That Correspond To My Coordinates
How to get gene name from coordinates using python.