6.1 years ago by
A simple Table Browser search of these regions do the trick, unless you need something more robust and for larger sets of data (NM_ is the refseq as mentioned above)?
table browser: http://genome.ucsc.edu/cgi-bin/hgTables?command=start
choose species and assembly
choose genes and gene prediction
choose refseq and ref gene
define regions above
output format: selected fields (choose at minimum gene name and alternative)
Gives a table delimited text file of gene names. For example, region above chr1:9933699-9934385 (assuming human, hg19) gives:
name chrom txStart txEnd name2
NM_020248 chr1 9908333 9970316 CTNNBIP1
NM_001012329 chr1 9908333 9970316 CTNNBIP1
You could use related tables to pull out other IDs and GO terms, etc.