Hello,
A quick question. I am using SABRE to demultiplex my single end GBS fastq.gz
files. As input I am using directly my gzipped fastq.gz
files, but I am not getting the output as a gzipped fastq.gz
. Sabre is instead outputting a normal ASCII text
, so fastq
file. Is there any way to solve this? Below is my command line:
sabre se -f myfile.fastq.gz -b barcodes.txt -u unknown_barcode.fastq.gz
Does not look like it supports compressed files. You will need to gzip the files afterwards.