I am running RSEM for the first time. In the command for the expression it says as follow
rsem-calculate-expression --phred64-quals \ -p 8 \ --output-genome-bam \ /data/mmliver.fq \ /ref/mouse_125 \ mmliver_single_quals
Could anyone tell me what is this
mmliver_single_quals stands for? When I am trying to run the command it terminated without showing any error. I used the following command
./rsem-calculate-expression --phred64-quals -p 8 --gzipped-read-file 293TInput2_S21_L008_R1_001.fastq.gz /ref/human_gencode /NOR.sequences/293T
I shall be very thankful for your response.