POS VARIANTS REF Allele Variations
99162 DEL/MNP TCGGTGTGCGCGG TCGG
99166 SNP T C
I have on my VCF: DELETION in position 99162 and SNP in position 99166.
It is impossible to have deletion in 99162 and snp in 99166 in the same time. How can i explain that ?? Should i keep snp or deletion in my vcf? Please help me
Thank you for your answer.