I have RNA-seq outputs from Kallisto, trying to analyze it by Sleuth in R. But, I am facing problem in installing it. below is the codes;
> if (!requireNamespace("BiocManager", quietly = TRUE)) + install.packages("BiocManager") > BiocManager::install() Bioconductor version 3.9 (BiocManager 1.30.10), R 3.6.1 (2019-07-05) Old packages: 'data.table' > library("devtools"). # "devtools" is already installed. > BiocManager::install("pachterlab/sleuth") Bioconductor version 3.9 (BiocManager 1.30.10), R 3.6.1 (2019-07-05) Installing github package(s) 'pachterlab/sleuth' Error: Failed to install 'sleuth' from GitHub: Timeout was reached: [api.github.com] Operation timed out after 10000 milliseconds with 0 out of 0 bytes received
> library('sleuth') Error in library("sleuth") : there is no package called 'sleuth'
I don't know why I can have sleuth library. Am I missing a step?